Welcome to dwi_preproc’s documentation!

The dwi_preproc preprocessing pipeline is a collection of bash and python scripts (python scripts not documented in this version/release) intended for preprocessing dMR image data.

Contents:

• Installation
  • External dependencies
  • Python dependencies
• Usage
• Pipeline Documentation
  • lib.sh (Bash Library Functions )
  • dwi_preproc.sh
  • Import Data (Stage 0)
  • Topup (Stage 1)
  • EDDY (Stage 2)
  • Post-process (Stage 3)
• Contributing to dwi_preproc
  • Development model
  • Commit messages
  • Version number
  • Releases
  • Testing
  • Coding conventions

Indices and tables

• Index

• Module Index

• Search Page